List of accepted papers

First list of 16 accepted papers, 5 papers are still under discussion

José E. R. Cury, Patrícia Roxo, Vasco Manquinho, Claudine Chaouiya and Pedro T. Monteiro.

Computation of immediate neighbours of monotone Boolean functions

Mathilde Gaillard and Ulysse Herbach.

Efficient stochastic simulation of gene regulatory networks using hybrid models of transcriptional bursting

Juliette Luiselli and Manuel Lafond.

Eukaryotic ancestry in a finite world

Andréa Ducos, Audrey Denizot, Thomas Guyet and Hugues Berry.

Evaluating PDE discovery methods for multiscale modeling of biological signals

Matthieu Bouguéon, Tatjana Petrov and Albin Salazar.

A rule-based modeling approach for studying animal collectives: a case study of juvenile honeybee thermotaxis

Jerome Feret and Rebecca Ghidini.

Reachability Analysis for Parametric Rule-Based Models

Thibaut Peyric, Thomas Lepoutre, Anton Crombach and Thomas Guyet.

Three-State Gene Expression Model Parameterized for Single-Cell Multi-Omics Data

Andrea Stallvik, Hans-Michael Kaltenbach and Jörg Stelling.

Optimal input design for model selection in systems with cell-to-cell variability

Felicity Escarzaga, Brian Donnelly and Kyle Winfree.

Optimizing Feature Extraction Methods using Class Similarity Ratio for EMG-based Hand Gesture Classification

Vojtěch Veselý, Eva Šmijáková, Samuel Pastva, Nikola Beneš and David Šafránek.

AEON 2025: Robust Control of Partially-Specified Boolean Networks (tool paper)

Tsz Pan Tong, Aoran Wang, George Panagopoulos and Jun Pang.

Kolmogorov-Arnold Network for Gene Regulatory Network Inference

Chabname Ghassemi Nedjad, Clémence Frioux and Loïc Paulevé.

Seed inference in interacting microbial communities using combinatorial optimization

Alix Moawad and Jörg Stelling.

Minimal metabolic exchanges for microbial communities in a chemostat at steady state

Exploring Metastable Dynamics of Gene Regulatory Networks with ISOKANN

Madeleine Eyraud, Maxime Folschette, Katsumi Inoue, Sébastien Lefebvre and Cédric Lhoussaine.

Influence Graphs of Phytoplankton Species Interactions using Logical Learning

Sergio Peignier, Amanda Lo Van, Yann Meunier, Elea Pauliat, Matis Zouari and Federica Calevro.

Decoding Gene Regulation in Alzheimer’s disease with Transfer Learning and Explainable Machine Learning

5 papers with conditional accept will be decided by June 23rd.

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