International Conference on Computational Methods in Systems Biology 2025

8:30 - 9:00 (30min)

Opening - François Fages & Sabine Pérès

9:00 - 10:00 (1h)

Chair: F. Fages, Machine learning session 1 ---- Invited talk: Causal discovery and network inference for biological and biomedical data - Hervé Isambert

https://cmsb2025.sciencesconf.org/data/program/keynote_isambert.pdf

10:00 - 10:30 (30min)

Kolmogorov-Arnold Network for Gene Regulatory Network Inference.

Tsz Pan Tong, Aoran Wang, George Panagopoulos and Jun Pang

10:30 - 11:00 (30min)

Coffee break

11:00 - 11:30 (30min)

Chair Loïc Paulevé, Boolean network session I ---- Three-State Gene Expression Model Parameterized for Single-Cell Multi-Omics Data.

Thibaut Peyric, Thomas Lepoutre, Anton Crombach and Thomas Guyet

11:30 - 12:00 (30min)

Computation of immediate neighbours of monotone Boolean functions.

José E.R. Cury, Patrı́cia Roxo, Vasco Manquinho, Claudine Chaouiya and Pedro T. Monteiro.

12:00 - 12:30 (30min)

On Model Reductions of Boolean Networks.

Claudine Chaouiya, Jérôme Feret and Patrı́cia T. Roxo

12:30 - 13:00 (30min)

AEON 2025: Robust Control of Partially-Specified Boolean Networks (tool paper).

Vojtěch Veselý, Eva Šmijáková, Samuel Pastva, Nikola Beneš and David Šafránek

13:20 - 14:30 (1h10)

Lunch

14:30 - 15:00 (30min)

Chair Marco Antoniotti, Population model and control session ---- Eukaryotic ancestry in a finite world.

Juliette Luiselli and Manuel Lafond

15:00 - 15:30 (30min)

Minimal metabolic exchanges for microbial communities in a chemostat at steady state.

Alix Moawad and Jörg Stelling

15:30 - 16:00 (30min)

Seed inference in interacting microbial communities using combinatorial optimization.

Chabname Ghassemi Nedjad, Clémence Frioux, Loı̈c Paulevé and Sebastı́an Nelson Mendoza

16:00 - 16:30 (30min)

A model-free control strategy for selective disruption of parkinsonian brain oscillations.

Cédric Join, Jakub Orlowski, Antoine Chaillet, Madeleine Lowery, Hugues Mounier and Michel Fliess

16:30 - 18:30 (2h)

Poster aperitif: 25 posters exposed for discussion in lunch room

23rd International Conference on Computational Methods in Systems Biology (CMSB 2025)

10-12 september 2025 Lyon (France)

Program