International Conference on Computational Methods in Systems Biology 2025

9:00 - 10:00 (1h)

Chair Jun Pang, Machine learning session 2 ---- Invited talk: Kernel-based perturbation testing for single-cell data - Franck Picard

https://cmsb2025.sciencesconf.org/data/program/keynote_picard.pdf

10:00 - 10:30 (30min)

Optimal input design for model selection in systems with cell-to-cell variability.

Andrea Stallvik, Hans-Michael Kaltenbach and Jörg Stelling

10:30 - 11:00 (30min)

Coffee break

11:00 - 11:30 (30min)

Chair Ion Petre, Machine learning session 3 ---- Decoding Gene Regulation in Alzheimer’s disease with Transfer Learning and Explainable Machine Learning.

Sergio Peignier, Amanda Lo Van, Yann Meunier, Elea Pauliat, Matis Zouari and Federica Calevro

11:30 - 12:00 (30min)

Interaction Graphs of Phytoplankton Species Interactions using Logical Learning

Madeleine Eyraud, Maxime Folschette, Katsumi Inoue, Sébastien Lefebvre and Cédric Lhoussaine

12:00 - 12:30 (30min)

Evaluating PDE discovery methods for multiscale modeling of biological signals.

Andréa Ducos, Audrey Denizot, Thomas Guyet and Hugues Berry

12:30 - 13:00 (30min)

Optimizing Feature Extraction Methods using Class Similarity Ratio for EMG-based Hand Gesture Classification.

Felicity Escarzaga, Brian Donnelly and Kyle Winfree

13:20 - 14:30 (1h10)

Lunch and posters

14:30 - 15:30 (1h)

Chair Elisabeth Pecou, Invited talk: Reverse Engineering and Optimization of Metabolic Networks - Susana Vinga

https://cmsb2025.sciencesconf.org/data/program/keynote_vinga.pdf

15:30 - 16:00 (30min)

Chair Pedro Monteiro, Boolean network session 2 ---- Continuous Petri Nets Faithfully Fluidify Most Permissive Boolean Networks.

Stefan Haar and Juri Kolčák

16:00 - 16:30 (30min)

Looking for Signs: Reasoning About FOBNNs Using SAT.

Hans-Jörg Schurr and Athénaı̈s Vaginay

16:30 - 19:00 (2h30)

Social event

in Lugdunum

19:00 - 21:00 (2h)

Dinner

23rd International Conference on Computational Methods in Systems Biology (CMSB 2025)

10-12 september 2025 Lyon (France)

Program